STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62070.1PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: drm:Dred_3296 TPR repeat-containing protein. (191 aa)    
Predicted Functional Partners:
AEG60217.1
KEGG: drm:Dred_1905 hypothetical protein.
 
     0.744
AEG61878.1
PFAM: O-antigen polymerase; KEGG: drm:Dred_3138 O-antigen polymerase.
 
 
   0.698
AEG59523.1
KEGG: drm:Dred_2397 hypothetical protein.
  
     0.695
AEG62069.1
KEGG: drm:Dred_3295 hypothetical protein.
 
     0.669
AEG59016.1
KEGG: drm:Dred_2897 hypothetical protein.
  
     0.615
AEG60890.1
PFAM: WD40-like beta Propeller containing protein; KEGG: drm:Dred_1354 WD40 domain-containing protein.
  
     0.612
AEG61978.1
KEGG: drm:Dred_2787 hypothetical protein.
  
     0.577
AEG61975.1
KEGG: drm:Dred_2787 hypothetical protein.
  
     0.563
AEG59484.1
KEGG: drm:Dred_2438 putative anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.557
AEG60940.1
PFAM: hypothetical protein; KEGG: drm:Dred_1314 hypothetical protein.
  
     0.547
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.