STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62072.1PFAM: Radical SAM domain protein; KEGG: drm:Dred_3298 radical SAM domain-containing protein. (450 aa)    
Predicted Functional Partners:
AEG62073.1
Hypothetical protein; Manually curated; KEGG: drm:Dred_3299 hypothetical protein.
 
 
 
 0.997
AEG59456.1
PFAM: protein of unknown function DUF633; KEGG: drm:Dred_2460 hypothetical protein.
  
     0.619
AEG62071.1
Peptidase M23; KEGG: drm:Dred_3297 peptidase M23B; PFAM: Peptidase M23; G5 domain protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
    0.556
AEG58778.1
KEGG: ttm:Tthe_0084 hypothetical protein.
  
 
 0.545
AEG58850.1
KEGG: drm:Dred_2201 hypothetical protein.
  
 
 0.545
AEG59820.1
KEGG: drm:Dred_2201 hypothetical protein.
  
 
 0.545
AEG60461.1
Stage V sporulation protein B; KEGG: drm:Dred_1761 polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein.
  
     0.542
AEG58411.1
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: drm:Dred_0058 Orn/Lys/Arg decarboxylase, major region.
 
     0.534
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
   
 0.504
AEG60243.1
PFAM: Aluminium resistance family protein; KEGG: drm:Dred_1879 aluminium resistance family protein.
  
     0.498
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.