STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62077.1SMART: AAA ATPase; TIGRFAM: ATP-dependent protease, Lon family; KEGG: drm:Dred_3302 endopeptidase La; PFAM: AAA ATPase central domain protein. (647 aa)    
Predicted Functional Partners:
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.788
AEG62079.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: drm:Dred_3304 membrane protein-like protein.
       0.722
AEG62076.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.712
AEG60202.1
KEGG: drm:Dred_1918 hypothetical protein.
  
     0.506
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.476
AEG58312.1
KEGG: drm:Dred_0005 hypothetical protein.
  
     0.472
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.456
AEG60758.1
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pth:PTH_0095 hypothetical protein.
 
     0.434
AEG60461.1
Stage V sporulation protein B; KEGG: drm:Dred_1761 polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein.
  
     0.428
AEG62087.1
KEGG: drm:Dred_3313 hypothetical protein.
 
     0.416
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.