STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62091.1PFAM: protein of unknown function DUF554; KEGG: drm:Dred_3319 hypothetical protein. (231 aa)    
Predicted Functional Partners:
AEG62092.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: drm:Dred_3320 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
       0.712
AEG62093.1
KEGG: drm:Dred_3321 cobyrinic acid a,c-diamide synthase.
       0.712
AEG62090.1
KEGG: drm:Dred_3318 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein.
 
     0.483
AEG62094.1
KEGG: scl:sce5626 leucine responsive regulatory protein; PFAM: Transcription regulator AsnC-type-like; regulatory protein MarR; SMART: Transcription regulator AsnC-type.
       0.437
AEG59268.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfu:Sfum_2001 hypothetical protein.
  
     0.414
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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