STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI95391.1Amidohydrolase. (338 aa)    
Predicted Functional Partners:
pobB
Phenoxybenzoate dioxygenase subunit beta.
 
  
  0.674
cprA_1
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
    
  0.609
pht2
Phthalate 4,5-dioxygenase oxygenase reductase subunit.
    
  0.600
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
  0.600
pheC
Cyclohexadienyl dehydratase precursor; Belongs to the bacterial solute-binding protein 3 family.
       0.550
yiaO_2
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
       0.519
bphC_1
Biphenyl-2,3-diol 1,2-dioxygenase.
    
 0.481
ndoA
Naphthalene 1,2-dioxygenase system ferredoxin subunit.
    
  0.438
yjjN_1
Putative L-galactonate oxidoreductase.
  
 
  0.429
yjjN_2
Putative L-galactonate oxidoreductase.
  
 
  0.429
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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