STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI95309.1Putative transporter YfdV. (309 aa)    
Predicted Functional Partners:
OJI95307.1
Hypothetical protein; Belongs to the UPF0178 family.
       0.782
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.782
OJI95306.1
alpha-D-glucose-1-phosphatase.
       0.767
ala_1
Alanine dehydrogenase.
       0.765
tme
NADP-dependent malic enzyme.
  
  
 0.675
maeB
NADP-dependent malic enzyme.
  
  
 0.675
yfiR
Putative HTH-type transcriptional regulator YfiR.
       0.536
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.