STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI95163.1Hypothetical protein; COQ9. (229 aa)    
Predicted Functional Partners:
ppsC_3
Phthiocerol synthesis polyketide synthase type I PpsC.
  
   0.873
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.841
OJI93827.1
Hypothetical protein.
  
     0.682
OJI93885.1
Antiporter inner membrane protein.
  
     0.671
bamB
Outer membrane protein assembly factor BamB precursor.
  
     0.635
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
  
 
 0.608
rpsU_1
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.596
OJI92470.1
Hypothetical protein.
  
     0.572
ubiB_1
Putative protein kinase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.
   
 
 0.562
ubiB_2
Putative protein kinase UbiB.
   
 
 0.562
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.