STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaT_7Sialic acid TRAP transporter permease protein SiaT. (442 aa)    
Predicted Functional Partners:
yiaO_5
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
 
  0.988
siaT_6
Sialic acid TRAP transporter permease protein SiaT.
 
 0.972
yiaO_7
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
    0.821
yiaO_4
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
    0.815
siaT_17
Sialic acid TRAP transporter permease protein SiaT.
  
 0.788
siaP_2
Sialic acid-binding periplasmic protein SiaP precursor.
  
    0.740
OJI95127.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
  0.689
OJI94986.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  0.689
yjjN_1
Putative L-galactonate oxidoreductase.
 
  
  0.633
yiaO_8
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
  
    0.584
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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