STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadAPutative cadmium-transporting ATPase. (780 aa)    
Predicted Functional Partners:
czcD_2
Cadmium, cobalt and zinc/H/K antiporter.
  
 
 0.876
OJI94650.1
Hypothetical protein.
  
 
 0.744
OJI94668.1
Hypothetical protein.
  
 
 0.736
zntR_3
HTH-type transcriptional regulator ZntR.
  
 0.610
parB_2
Putative chromosome-partitioning protein ParB.
  
     0.539
OJI94534.1
Hypothetical protein.
 
     0.536
mco
Multicopper oxidase mco.
 
  
 0.481
OJI94545.1
Hypothetical protein.
  
     0.450
bdbD_3
Disulfide bond formation protein D precursor.
 
 
   0.449
alkA
DNA-3-methyladenine glycosylase.
   
 
 0.448
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.