STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI94617.1TrbL/VirB6 plasmid conjugal transfer protein. (337 aa)    
Predicted Functional Partners:
virB9
Type IV secretion system protein virB9 precursor.
 
 0.990
virB8
Type IV secretion system protein virB8.
 
  
 0.987
virB4_1
Type IV secretion system protein virB4.
 
 
 0.985
ptlG_1
Type IV secretion system protein PtlG.
 
 
 0.982
OJI94623.1
Type IV secretory pathway, VirB3-like protein.
 
  
 0.982
OJI94619.1
Type IV secretion system protein.
 
     0.951
OJI94624.1
TrbC/VIRB2 family protein.
 
   
 0.948
slt_2
Soluble lytic murein transglycosylase precursor.
 
   
 0.947
virB4_2
Type IV secretion system protein virB4.
 
 
 0.917
OJI94613.1
Type IV secretion system protein VirB11.
 
     0.909
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.