STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI94429.1Squalene/phytoene synthase. (255 aa)    
Predicted Functional Partners:
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.934
crtD
Hydroxyneurosporene desaturase.
  
 
 0.913
crtI
Phytoene desaturase (neurosporene-forming).
  
 
 0.913
OJI93874.1
Putative oxidoreductasec.
  
 
 0.898
ispU
Ditrans,polycis-undecaprenyl-diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.883
crtB
15-cis-phytoene synthase.
    
  0.875
nqo1_2
NADH-quinone oxidoreductase subunit 1.
     
 0.860
ispA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.853
OJI92887.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.853
OJI94430.1
Short chain dehydrogenase.
       0.790
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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