Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJI94379.1 | ctaDII | PFRI_14080 | PFRI_14090 | Hypothetical protein. | Cytochrome c oxidase subunit 1-beta; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.847 |
OJI94379.1 | kfoC | PFRI_14080 | PFRI_14070 | Hypothetical protein. | Chondroitin synthase. | 0.727 |
algA | epsL_2 | PFRI_35550 | PFRI_38510 | Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. | Putative sugar transferase EpsL. | 0.985 |
algA | kfoC | PFRI_35550 | PFRI_14070 | Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. | Chondroitin synthase. | 0.442 |
ctaDII | OJI94379.1 | PFRI_14090 | PFRI_14080 | Cytochrome c oxidase subunit 1-beta; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | Hypothetical protein. | 0.847 |
ctaDII | kfoC | PFRI_14090 | PFRI_14070 | Cytochrome c oxidase subunit 1-beta; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | Chondroitin synthase. | 0.503 |
epsL_2 | algA | PFRI_38510 | PFRI_35550 | Putative sugar transferase EpsL. | Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.985 |
epsL_2 | kfoC | PFRI_38510 | PFRI_14070 | Putative sugar transferase EpsL. | Chondroitin synthase. | 0.419 |
flgI | kfoC | PFRI_37540 | PFRI_14070 | Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | Chondroitin synthase. | 0.455 |
kfoC | OJI94379.1 | PFRI_14070 | PFRI_14080 | Chondroitin synthase. | Hypothetical protein. | 0.727 |
kfoC | algA | PFRI_14070 | PFRI_35550 | Chondroitin synthase. | Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.442 |
kfoC | ctaDII | PFRI_14070 | PFRI_14090 | Chondroitin synthase. | Cytochrome c oxidase subunit 1-beta; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.503 |
kfoC | epsL_2 | PFRI_14070 | PFRI_38510 | Chondroitin synthase. | Putative sugar transferase EpsL. | 0.419 |
kfoC | flgI | PFRI_14070 | PFRI_37540 | Chondroitin synthase. | Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.455 |
kfoC | pht2 | PFRI_14070 | PFRI_14460 | Chondroitin synthase. | Phthalate 4,5-dioxygenase oxygenase reductase subunit. | 0.525 |
pht2 | kfoC | PFRI_14460 | PFRI_14070 | Phthalate 4,5-dioxygenase oxygenase reductase subunit. | Chondroitin synthase. | 0.525 |