STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpcH_24-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Belongs to the HpcH/HpaI aldolase family. (256 aa)    
Predicted Functional Partners:
tesE
2-hydroxyhexa-2,4-dienoate hydratase.
 
 0.948
hpd_1
4-hydroxyphenylpyruvate dioxygenase.
    
  0.819
aroE_1
Quinate/shikimate dehydrogenase.
       0.773
siaT_13
Sialic acid TRAP transporter permease protein SiaT.
       0.760
OJI94329.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
       0.760
hpcD
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.697
siaP_1
Sialic acid-binding periplasmic protein SiaP precursor.
       0.636
garR
2-hydroxy-3-oxopropionate reductase.
  
 
  0.529
ligC_1
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
  
    0.490
hgd
2-(hydroxymethyl)glutarate dehydrogenase.
  
 
  0.452
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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