STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proVGlycine betaine/L-proline transport ATP-binding protein ProV. (351 aa)    
Predicted Functional Partners:
opuAB_2
Glycine betaine transport system permease protein OpuAB.
 0.996
OJI94338.1
Glycine betaine transporter periplasmic subunit.
 
 0.995
opuAB_3
Glycine betaine transport system permease protein OpuAB.
 0.987
opuAB_1
Glycine betaine transport system permease protein OpuAB.
 0.984
OJI93252.1
Glycine betaine transporter periplasmic subunit.
 
 0.974
gbuC
Glycine betaine/carnitine transport binding protein GbuC precursor.
 
 0.971
OJI94335.1
Arylesterase.
 
     0.851
modB_2
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.828
msbA
Lipid A export ATP-binding/permease protein MsbA.
 
     
0.765
oppC
Oligopeptide transport system permease protein OppC.
 
      0.720
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.