STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoA_22-dehydro-3-deoxy-6-phosphogalactonate aldolase. (202 aa)    
Predicted Functional Partners:
dgoK1_1
Putative 2-dehydro-3-deoxygalactonokinase DgoK1.
  
 0.989
dgoK1_2
Putative 2-dehydro-3-deoxygalactonokinase DgoK1.
  
 0.954
araB_1
L-arabinolactonase.
 
   
 0.839
xylB_1
D-xylose 1-dehydrogenase.
 
    0.811
OJI94158.1
Beta-galactosidase.
       0.801
eda
KHG/KDPG aldolase.
  
  
 
0.735
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.685
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.611
rafA
Alpha-galactosidase.
       0.588
araQ_3
L-arabinose transport system permease protein AraQ.
       0.586
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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