Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJI93899.1 | OJI95231.1 | PFRI_18000 | PFRI_05670 | Chorismate mutase. | Cyclohexadienyl dehydrogenase. | 0.948 |
OJI93899.1 | aroA | PFRI_18000 | PFRI_02450 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.935 |
OJI93899.1 | aroC | PFRI_18000 | PFRI_38960 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.977 |
OJI93899.1 | aroH | PFRI_18000 | PFRI_37300 | Chorismate mutase. | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 0.980 |
OJI93899.1 | ffh | PFRI_18000 | PFRI_18050 | Chorismate mutase. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.889 |
OJI93899.1 | pheA | PFRI_18000 | PFRI_32880 | Chorismate mutase. | P-protein. | 0.957 |
OJI93899.1 | rpmC | PFRI_18000 | PFRI_17310 | Chorismate mutase. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.842 |
OJI93899.1 | trpE | PFRI_18000 | PFRI_16090 | Chorismate mutase. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.917 |
OJI93899.1 | trpG | PFRI_18000 | PFRI_16130 | Chorismate mutase. | Anthranilate synthase component 2. | 0.923 |
OJI93899.1 | tyrB | PFRI_18000 | PFRI_24940 | Chorismate mutase. | Aromatic-amino-acid aminotransferase. | 0.912 |
OJI95231.1 | OJI93899.1 | PFRI_05670 | PFRI_18000 | Cyclohexadienyl dehydrogenase. | Chorismate mutase. | 0.948 |
OJI95231.1 | aroA | PFRI_05670 | PFRI_02450 | Cyclohexadienyl dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.992 |
OJI95231.1 | aroC | PFRI_05670 | PFRI_38960 | Cyclohexadienyl dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.930 |
OJI95231.1 | pheA | PFRI_05670 | PFRI_32880 | Cyclohexadienyl dehydrogenase. | P-protein. | 0.949 |
OJI95231.1 | trpE | PFRI_05670 | PFRI_16090 | Cyclohexadienyl dehydrogenase. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.652 |
OJI95231.1 | trpG | PFRI_05670 | PFRI_16130 | Cyclohexadienyl dehydrogenase. | Anthranilate synthase component 2. | 0.652 |
OJI95231.1 | tyrB | PFRI_05670 | PFRI_24940 | Cyclohexadienyl dehydrogenase. | Aromatic-amino-acid aminotransferase. | 0.896 |
aroA | OJI93899.1 | PFRI_02450 | PFRI_18000 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate mutase. | 0.935 |
aroA | OJI95231.1 | PFRI_02450 | PFRI_05670 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Cyclohexadienyl dehydrogenase. | 0.992 |
aroA | aroC | PFRI_02450 | PFRI_38960 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.997 |
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