STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI93960.1Polysaccharide deacetylase. (233 aa)    
Predicted Functional Partners:
OJI94948.1
Hypothetical protein.
  
 
 0.719
OJI94375.1
Beta-monoglucosyldiacylglycerol synthase.
  
 
 0.719
OJI93961.1
Hypothetical protein.
       0.668
OJI93962.1
GcrA cell cycle regulator.
       0.529
pbpE
Penicillin-binding protein 4*.
  
     0.479
uao
Uric acid degradation bifunctional protein.
  
 
  0.431
yadH_1
Inner membrane transport permease YadH.
     
 0.417
bglA
Beta-glucosidase A.
    
 0.412
nagZ
Beta-hexosaminidase.
    
 0.412
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.