STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mlr_44-methylaminobutanoate oxidase (formaldehyde-forming). (404 aa)    
Predicted Functional Partners:
soxA_1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.945
soxA_2
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.938
soxA_4
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.938
soxD_3
Sarcosine oxidase subunit delta.
  
 0.851
soxG
Sarcosine oxidase subunit gamma.
  
  0.808
OJI93983.1
Molybdopterin biosynthesis protein MoeB.
 
     0.799
OJI93985.1
acyl-CoA dehydrogenase fadE12.
    
  0.782
frc_1
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
       0.773
OJI93986.1
Hypothetical protein.
       0.773
znuB_1
High-affinity zinc uptake system membrane protein ZnuB.
       0.773
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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