STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI93740.1Tripartite tricarboxylate transporter TctA family protein. (675 aa)    
Predicted Functional Partners:
OJI93741.1
Hypothetical protein.
 
  
 0.946
galD_1
4-oxalomesaconate tautomerase.
 
     0.928
OJI93738.1
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.925
OJI92153.1
Tripartite tricarboxylate transporter family receptor.
 
  
 0.856
qseC
Sensor protein QseC.
 
   
 0.843
OJI92617.1
Tripartite tricarboxylate transporter family receptor.
  
 0.837
OJI93737.1
Putative ammonia monooxygenase.
 
    0.688
OJI93746.1
Tripartite tricarboxylate transporter family receptor.
 
  
 0.658
arlR
Response regulator ArlR.
 
     0.572
ifcA
Fumarate reductase flavoprotein subunit precursor.
 
     0.485
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.