STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAATP-dependent helicase/nuclease subunit A; Belongs to the helicase family. UvrD subfamily. (1114 aa)    
Predicted Functional Partners:
recD2
ATP-dependent RecD-like DNA helicase.
  
 
 0.981
OJI93587.1
PD-(D/E)XK nuclease superfamily protein.
  
 0.980
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
     
 0.855
glmU_1
Bifunctional protein GlmU.
       0.837
OJI93589.1
Phosphotransferase enzyme family protein.
       0.837
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.760
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
  
    0.721
ligA_1
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
 
 
 0.694
OJI93020.1
DNA polymerase III subunit chi.
  
   
 0.687
uvrD
DNA helicase II.
 
 
0.677
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.