STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctrA_1Cell cycle response regulator CtrA. (58 aa)    
Predicted Functional Partners:
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.990
OJI94079.1
Hypothetical protein.
  
 0.958
OJI93671.1
Blue-light-activated protein.
  
 0.921
barA
Signal transduction histidine-protein kinase BarA.
  
 0.892
nqo1_2
NADH-quinone oxidoreductase subunit 1.
   
 
 0.864
qseC
Sensor protein QseC.
  
 0.844
OJI93348.1
Hypothetical protein.
 
    0.816
ycgF
Blue light- and temperature-regulated antirepressor YcgF.
  
 0.806
OJI93962.1
GcrA cell cycle regulator.
  
  
 0.737
OJI93091.1
Hypothetical protein.
  
     0.711
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.