STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylFD-xylose-binding periplasmic protein precursor. (342 aa)    
Predicted Functional Partners:
xylH
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
rbsA_1
Ribose import ATP-binding protein RbsA.
 
 0.968
OJI93263.1
ASPIC and UnbV.
 
     0.904
nagC
N-acetylglucosamine repressor.
 
     0.876
rbsA_2
Ribose import ATP-binding protein RbsA.
 
 0.852
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.843
xylB_2
Xylulose kinase.
 
   
 0.736
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 0.736
rbsC_3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.689
mglA_3
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 0.674
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.