STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI93148.1CAAX amino terminal protease self- immunity. (306 aa)    
Predicted Functional Partners:
OJI92063.1
Bacterial SH3 domain protein.
  
   0.917
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
    0.842
folC
Bifunctional protein FolC; Belongs to the folylpolyglutamate synthase family.
       0.837
OJI94983.1
Hypothetical protein.
  
    0.752
OJI93149.1
Fatty acid desaturase.
       0.740
yadH_1
Inner membrane transport permease YadH.
  
  
 0.611
yadH_2
Inner membrane transport permease YadH.
  
  
 0.611
OJI93150.1
Hypothetical protein.
       0.487
bepD
Efflux pump periplasmic linker BepD precursor.
  
  
 0.455
OJI93152.1
Hypothetical protein.
 
     0.446
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.