STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvA_2Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
cynR_2
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.740
gltC_1
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.737
benM_2
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.709
OJI92467.1
DNA-binding transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family.
  
     0.586
acdA_6
acyl-CoA dehydrogenase.
  
    0.548
bbsF_4
succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.
       0.543
dmlR_4
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
     0.459
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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