STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI92909.156kDa selenium binding protein (SBP56). (449 aa)    
Predicted Functional Partners:
OJI92908.1
Ferredoxin-1.
 
     0.928
OJI95488.1
Hypothetical protein.
   
   0.925
gltB_2
Glutamate synthase large chain precursor.
    
  0.894
acsE
5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.
    
  0.877
yitJ
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
    
  0.876
blh_1
Beta-lactamase hydrolase-like protein.
  
 
  0.867
sseA
3-mercaptopyruvate sulfurtransferase.
    
  0.867
OJI91742.1
Methionine synthase.
    
  0.867
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.865
fccB
Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor.
   
 
  0.865
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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