STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nicRHTH-type transcriptional repressor NicR. (141 aa)    
Predicted Functional Partners:
braC_2
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
     0.783
hnr
6-hydroxynicotinate reductase.
 
     0.759
OJI92676.1
Hypothetical protein.
 
     0.756
OJI92675.1
Hypothetical protein.
 
     0.741
OJI92674.1
Hypothetical protein.
 
     0.722
ena
Enamidase.
 
    0.707
livH_12
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
     0.685
tsaM1_2
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1.
 
     0.681
mop
Aldehyde oxidoreductase.
 
     0.649
lptB_8
Lipopolysaccharide export system ATP-binding protein LptB.
 
     0.631
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.