Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OJI92569.1anti-sigma-K factor rskA. (254 aa)    
Predicted Functional Partners:
rpoE
ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.685
cobS_2
Aerobic cobaltochelatase subunit CobS.
       0.589
sigW_2
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.545
msrB_2
Peptide methionine sulfoxide reductase MsrB.
       0.543
sigW_1
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.527
sigH
ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.527
OJI94938.1
Hypothetical protein.
  
     0.422
OJI94205.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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