Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ypdFAminopeptidase YpdF. (598 aa)    
Predicted Functional Partners:
OJI92573.1
Hypothetical protein.
       0.679
cobT
Aerobic cobaltochelatase subunit CobT.
 
     0.673
soxA_1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.538
soxA_2
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.538
soxA_4
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.538
crnA
Creatinine amidohydrolase.
    
  0.482
soxD_3
Sarcosine oxidase subunit delta.
     
  0.476
soxG
Sarcosine oxidase subunit gamma.
     
  0.476
etfA
Electron transfer flavoprotein subunit alpha.
  
  0.475
cobS_2
Aerobic cobaltochelatase subunit CobS.
       0.468
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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