STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI92319.1snoaL-like domain protein. (333 aa)    
Predicted Functional Partners:
OJI91743.1
Cupin domain protein.
 
     0.781
OJI91744.1
snoaL-like polyketide cyclase.
 
     0.779
OJI91745.1
snoaL-like polyketide cyclase.
 
     0.779
OJI91750.1
Putative ABC transporter-binding protein precursor.
  
     0.774
OJI92320.1
Amidohydrolase.
       0.773
araP
L-arabinose transport system permease protein AraP.
  
     0.772
OJI91741.1
Hypothetical protein.
  
     0.765
sugB_4
Trehalose transport system permease protein SugB.
 
     0.758
OJI91742.1
Methionine synthase.
  
     0.755
exuR
Putative HTH-type transcriptional repressor ExuR.
  
     0.684
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.