STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpCytochrome c551 peroxidase precursor. (440 aa)    
Predicted Functional Partners:
OJI92909.1
56kDa selenium binding protein (SBP56).
  
 
 0.849
OJI93263.1
ASPIC and UnbV.
 
   
 0.766
trmFO
methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.678
gltX_2
glutamate--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.591
OJI92285.1
Methyltransferase domain protein.
       0.591
tolB
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   0.580
xylF
D-xylose-binding periplasmic protein precursor.
  
     0.452
nagC
N-acetylglucosamine repressor.
  
    0.448
fccA
Cytochrome subunit of sulfide dehydrogenase.
  
  
 0.421
OJI94835.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.