STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmrCyclic di-GMP phosphodiesterase Gmr. (83 aa)    
Predicted Functional Partners:
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
     0.980
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.881
ycgF
Blue light- and temperature-regulated antirepressor YcgF.
  
 0.853
barA
Signal transduction histidine-protein kinase BarA.
  
 
 0.814
dosP
Oxygen sensor protein DosP.
 
 
 0.800
yedQ
Putative diguanylate cyclase YedQ.
 
 
 0.758
OJI93671.1
Blue-light-activated protein.
  
 0.675
yycF_1
Transcriptional regulatory protein YycF.
  
 
 0.560
OJI95241.1
Heme NO binding protein.
   
    0.461
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
    0.461
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.