Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJI92067.1Hypothetical protein. (409 aa)    
Predicted Functional Partners:
OJI94952.1
Hypothetical protein.
  
    0.703
OJI94953.1
core-2/I-branching enzyme.
  
     0.691
OJI91774.1
Pectate lyase superfamily protein.
  
   0.637
OJI91917.1
Hypothetical protein.
  
     0.631
OJI94764.1
core-2/I-branching enzyme.
  
     0.624
OJI93523.1
Hypothetical protein.
  
     0.614
OJI93052.1
Capsule polysaccharide biosynthesis protein.
  
     0.596
OJI94497.1
GSCFA family protein.
  
 
   0.571
OJI93176.1
Sulfotransferase family protein.
  
     0.566
OJI93051.1
Capsule polysaccharide biosynthesis protein.
  
     0.561
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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