STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erpAIron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family. (107 aa)    
Predicted Functional Partners:
OJI92282.1
Hypothetical protein.
  
  
 0.865
djlA
DnaJ-like protein DjlA.
  
 
 0.861
grxD
Glutaredoxin-4; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.836
nifS
Cysteine desulfurase NifS.
 
  
 0.801
nfuA
Fe/S biogenesis protein NfuA.
 
 
 0.768
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.752
ygfZ
tRNA-modifying protein YgfZ; Belongs to the GcvT family.
 
 
 0.676
sufB
FeS cluster assembly protein SufB.
  
 
 0.659
sufD
FeS cluster assembly protein SufD.
  
 
 0.659
sufC
Putative ATP-dependent transporter SufC.
  
 
 0.656
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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