STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI91642.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
spoVD
Stage V sporulation protein D.
 
    0.929
mreC
Cell shape-determining protein MreC.
 
     0.879
ghrA
Glyoxylate/hydroxypyruvate reductase A.
       0.837
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.837
OJI92689.1
Hypothetical protein.
  
     0.770
mreB
Rod shape-determining protein MreB.
       0.744
OJI93694.1
Hypothetical protein.
  
     0.682
OJI94404.1
Hypothetical protein.
  
     0.681
rodZ
Cytoskeleton protein RodZ.
  
    0.679
OJI94839.1
Hypothetical protein.
  
     0.668
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.