STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_11long-chain-fatty-acid--CoA ligase. (506 aa)    
Predicted Functional Partners:
nqo1_2
NADH-quinone oxidoreductase subunit 1.
  
 
   0.851
sauT_1
Putative sulfoacetate--CoA ligase.
 
0.819
srfAC
Surfactin synthase subunit 3.
 
0.812
yghU
Disulfide-bond oxidoreductase YghU.
       0.773
yciC_3
Putative metal chaperone YciC.
       0.773
nfdA
N-substituted formamide deformylase precursor.
       0.773
fabD
Malonyl CoA-acyl carrier protein transacylase.
   
 0.763
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.757
OJI95366.1
Hypothetical protein.
    
  0.714
OJI92683.1
PAP2 superfamily protein.
    
  0.714
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.