STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE96840.1Helix-turn-helix domain protein; InterPro IPR001387; KEGG: tte:TTE2376 hypothetical protein; PFAM: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. (177 aa)    
Predicted Functional Partners:
AEE96839.1
KEGG: tpd:Teth39_0315 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.951
AEE96841.1
tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.836
AEE96842.1
Hypothetical protein; KEGG: sii:LD85_0415 methane/phenol/toluene hydroxylase; SPTR: Methane/phenol/toluene hydroxylase.
       0.773
AEE96843.1
COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR002638: IPR000056; KEGG: tmt:Tmath_0853 quinolinate phosphoribosyl transferase; PFAM: Quinolinate phosphoribosyl transferase; ribulose-phosphate 3-epimerase; SPTR: Quinolinate phosphoribosyl transferase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; Belongs to the NAPRTase family.
 
     0.756
AEE96689.1
KEGG: tmt:Tmath_2131 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; PFAM: Uncharacterized protein family UPF0007.
  
     0.749
AEE97253.1
KEGG: tmt:Tmath_2131 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; PFAM: Uncharacterized protein family UPF0007.
  
     0.742
AEE97145.1
Protein of unknown function DUF1614; InterPro IPR011672; KEGG: amt:Amet_2864 hypothetical protein; PFAM: protein of unknown function DUF1614; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1614).
  
     0.709
AEE96838.1
Hypothetical protein; KEGG: dae:Dtox_0249 shikimate/quinate 5-dehydrogenase; SPTR: Shikimate/quinate 5-dehydrogenase.
       0.701
AEE97144.1
InterPro IPR010897; KEGG: aoe:Clos_1395 stage II sporulation P family protein; PFAM: Stage II sporulation P family protein; SPTR: Stage II sporulation P family protein; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P.
  
     0.628
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.587
Your Current Organism:
Mahella australiensis
NCBI taxonomy Id: 697281
Other names: M. australiensis 50-1 BON, Mahella australiensis 50-1 BON, Mahella australiensis DSM 15567, Mahella australiensis str. 50-1 BON, Mahella australiensis strain 50-1 BON
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.