STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW21372.1PFAM: Phosphoribosyltransferase; KEGG: mca:MCA1124 competence protein F. (235 aa)    
Predicted Functional Partners:
EGW20634.1
KEGG: noc:Noc_3012 smf protein; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.
 
 
 0.951
EGW19881.1
KEGG: mca:MCA2627 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.929
EGW22992.1
KEGG: alv:Alvin_2991 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like; Belongs to the UPF0758 family.
 
    0.907
EGW22431.1
KEGG: vfm:VFMJ11_2008 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.870
EGW22901.1
Sigma 54 interacting domain protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: nhl:Nhal_3276 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core.
 
  
 0.867
aroA
Prephenate dehydrogenase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
   
  
 0.840
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.826
EGW19887.1
PFAM: HI0933-like protein; KEGG: scl:sce5178 hypothetical protein.
  
    0.761
EGW22711.1
UPF0102 protein yraN; TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: sde:Sde_3146 sigma-54 factor; PFAM: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
 
    0.754
EGW22362.1
KEGG: alv:Alvin_2589 hypothetical protein.
   
    0.679
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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