STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW21550.1PFAM: Integrase, catalytic core; KEGG: kpn:KPN_pKPN3p05906 Sea24. (435 aa)    
Predicted Functional Partners:
EGW21551.1
PFAM: Neisseria PilC; KEGG: cja:CJA_3211 putative fimbrial protein.
       0.636
EGW23140.1
TniB family protein; PFAM: Bacterial TniB; KEGG: bgf:BC1003_0018 TniB family protein.
  
 
 0.575
EGW21552.1
KEGG: neu:NE1748 hypothetical protein.
       0.492
EGW21555.1
Hypothetical protein; KEGG: neu:NE1751 putative type-4 fimbrial pilin related signal peptide protein.
  
    0.460
EGW21553.1
KEGG: nhl:Nhal_0910 type IV pilus assembly protein PilW.
       0.456
EGW21554.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV.
       0.456
EGW21549.1
KEGG: maq:Maqu_0872 general secretion pathway protein H.
       0.424
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.