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Mettu_0395 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0395" - Glucan endo-1,6-beta-glucosidase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0395Glucan endo-1,6-beta-glucosidase; KEGG- cpi-Cpin_6736 glycoside hydrolase family 30; PFAM- Glycoside hydrolase, family 30; Belongs to the glycosyl hydrolase 30 family (457 aa)    
Predicted Functional Partners:
Mettu_4338
Beta-glucosidase; KEGG- cps-CPS_2365 xylosidase/arabinosidase; PFAM- Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; Belongs to the glycosyl hydrolase 3 family (733 aa)
 
  0.732
Mettu_0405
KEGG- hor-Hore_04260 hypothetical protein (1088 aa)
 
   
    0.584
Mettu_0396
KEGG- hypothetical protein (176 aa)
              0.583
Mettu_0738
KEGG- mca-MCA0825 AraC family transcriptional regulator; PFAM- Helix-turn-helix, AraC type; SMART- Helix-turn-helix, AraC domain (276 aa)
    
          0.459
Mettu_0394
Glycogen debranching enzyme GlgX; SMART- Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM- Glycogen debranching enzyme GlgX; KEGG- sfu-Sfum_2956 glycogen debranching enzyme GlgX; PFAM- Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal; Alpha-amylase, C-terminal all beta; Belongs to the glycosyl hydrolase 13 family (696 aa)
              0.458
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
       
  0.425
Mettu_2372
KEGG- hch-HCH_03572 BNR/Asp-box repeat-containing protein (417 aa)
      
 
  0.417
Mettu_3319
PFAM- Phytanoyl-CoA dioxygenase; KEGG- aba-Acid345_4531 phytanoyl-CoA dioxygenase (346 aa)
    
          0.404
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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