STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW21683.1TIGRFAM: CRISPR-associated protein Crm2; KEGG: dae:Dtox_2979 CRISPR-associated protein, Crm2 family. (634 aa)    
Predicted Functional Partners:
EGW21682.1
PFAM: CRISPR-associated protein, Cmr3; KEGG: rxy:Rxyl_0262 hypothetical protein.
 
 
 
 0.997
EGW21679.1
KEGG: dae:Dtox_2975 CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated protein, TM1791; PFAM: Protein of unknown function DUF324.
 
 
 
 0.993
EGW21680.1
KEGG: dae:Dtox_2976 CRISPR-associated protein, Cmr5 family; TIGRFAM: CRISPR-associated protein, TM1791.1; PFAM: CRISPR-associated protein, TM1791.1.
 
 
 
 0.992
EGW21681.1
KEGG: ttr:Tter_1949 CRISPR-associated RAMP protein, Cmr4 family; TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: Protein of unknown function DUF324.
 
 
 
 0.992
EGW21684.1
Manually curated; TIGRFAM: CRISPR-associated protein TM1795 family, N-terminal; KEGG: rxy:Rxyl_0264 CRISPR-associated RAMP Cmr1 family protein; PFAM: Protein of unknown function DUF324.
 
 
 
 0.988
EGW21685.1
KEGG: paa:Paes_1983 conserved hypothetical cytosolic protein.
 
  
 0.930
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.547
EGW21048.1
Hypothetical protein; Manually curated; KEGG: ana:all1618 hypothetical protein.
  
     0.509
EGW19995.1
PFAM: Sulfotransferase; Sterol-binding; KEGG: aae:aq_1088 hypothetical protein.
  
     0.507
EGW20435.1
PFAM: Protein of unknown function DUF820; KEGG: nhl:Nhal_0133 protein of unknown function DUF820.
  
     0.476
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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