STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGW22008.1KEGG: nwa:Nwat_1399 CSE3 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, CT1974; PFAM: CRISPR-associated protein, CT1974. (205 aa)    
Predicted Functional Partners:
EGW22009.1
KEGG: nwa:Nwat_1400 Cas5 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Cas5e-type; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5e-type.
 
 
 0.996
EGW22010.1
KEGG: nwa:Nwat_1401 CSE4 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, CT1975; PFAM: CRISPR-associated protein, CT1975.
 
 
 0.994
EGW22014.1
CRISPR-associated protein, Cse1 family; KEGG: epy:EpC_08080 hypothetical protein; TIGRFAM: CRISPR-associated protein Cse1; PFAM: CRISPR-associated protein Cse1.
 
 
 0.992
EGW22015.1
TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: gsu:GSU1384 hypothetical protein; SMART: DEAD-like helicase, N-terminal.
 
 
 
 0.982
EGW22013.1
KEGG: nwa:Nwat_1402 CSE2 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cse2; PFAM: CRISPR-associated protein Cse2.
  
 
 0.978
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.926
EGW22004.1
KEGG: nwa:Nwat_1397 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein, Cas2; PFAM: CRISPR-associated protein, Cas2.
 
  
 0.893
EGW22011.1
PFAM: Protein of unknown function DUF2442; KEGG: amc:MADE_00619 hypothetical protein.
       0.773
EGW22012.1
KEGG: rfe:RF_0889 hypothetical protein.
       0.773
EGW22006.1
KEGG: tgr:Tgr7_0531 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system.
       0.610
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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