STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW22012.1KEGG: rfe:RF_0889 hypothetical protein. (85 aa)    
Predicted Functional Partners:
EGW22011.1
PFAM: Protein of unknown function DUF2442; KEGG: amc:MADE_00619 hypothetical protein.
 
     0.952
EGW19957.1
PFAM: Protein of unknown function DUF2442; KEGG: hypothetical protein.
 
     0.799
EGW22008.1
KEGG: nwa:Nwat_1399 CSE3 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, CT1974; PFAM: CRISPR-associated protein, CT1974.
       0.773
EGW22009.1
KEGG: nwa:Nwat_1400 Cas5 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Cas5e-type; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5e-type.
       0.773
EGW22010.1
KEGG: nwa:Nwat_1401 CSE4 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, CT1975; PFAM: CRISPR-associated protein, CT1975.
       0.773
EGW22013.1
KEGG: nwa:Nwat_1402 CSE2 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cse2; PFAM: CRISPR-associated protein Cse2.
       0.773
EGW22014.1
CRISPR-associated protein, Cse1 family; KEGG: epy:EpC_08080 hypothetical protein; TIGRFAM: CRISPR-associated protein Cse1; PFAM: CRISPR-associated protein Cse1.
       0.773
EGW22007.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.664
EGW22006.1
KEGG: tgr:Tgr7_0531 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system.
       0.610
EGW22015.1
TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: gsu:GSU1384 hypothetical protein; SMART: DEAD-like helicase, N-terminal.
       0.489
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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