STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW22234.1PFAM: Protein of unknown function DUF46; KEGG: mca:MCA0197 hypothetical protein. (167 aa)    
Predicted Functional Partners:
EGW22232.1
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sun:SUN_1448 phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
 0.852
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.825
EGW21855.1
KEGG: mca:MCA1870 riboflavin biosynthesis protein RibD domain-containing protein.
  
     0.693
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
    
 0.685
EGW21960.1
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: mca:MCA1682 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.618
EGW21642.1
KEGG: app:CAP2UW1_1888 phospholipase D/transphosphatidylase.
     
 0.599
EGW22233.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: llo:LLO_2719 hypothetical protein.
       0.546
EGW20998.1
Phosphoesterase; KEGG: mca:MCA2985 PAP2 superfamily protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
     
 0.535
EGW20163.1
PFAM: Monooxygenase, FAD-binding; KEGG: spc:Sputcn32_0436 FAD dependent oxidoreductase.
     
 0.534
EGW22558.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; KEGG: chl:Chy400_2186 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; Belongs to the HAD-like hydrolase superfamily.
    
  0.533
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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