STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW22375.1KEGG: eba:p1B285 hypothetical protein. (293 aa)    
Predicted Functional Partners:
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 0.934
EGW22378.1
KEGG: eba:p1B290 hypothetical protein.
   
 
 0.821
EGW22376.1
KEGG: eba:p1B286 hypothetical protein.
       0.798
EGW22377.1
KEGG: eba:p1B288 hypothetical protein.
       0.798
EGW23130.1
KEGG: plu:plu1837 hypothetical protein.
    
 0.742
EGW23264.1
DNA sulfur modification protein DndD; KEGG: nis:NIS_1680 hypothetical protein; TIGRFAM: DNA sulphur modification protein DndD; PFAM: RecF/RecN/SMC protein, N-terminal.
    
 0.742
EGW23746.1
PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: mxa:MXAN_0959 nuclease SbcCD subunit C.
    
 0.742
EGW20693.1
PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: xbo:XBJ1_1690 ATP-dependent dsDNA exonuclease.
    
 0.742
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
 0.720
EGW21046.1
PFAM: Metallophosphoesterase; KEGG: dia:Dtpsy_0522 metallophosphoesterase.
   
 0.720
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.