STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW22763.1KEGG: wch:wcw_0148 putative DNA repair photolyase. (329 aa)    
Predicted Functional Partners:
EGW22762.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: wch:wcw_0147 hypothetical protein.
 
     0.872
EGW23270.1
KEGG: wch:wcw_0149 hypothetical protein.
 
   
 0.808
EGW22764.1
Hypothetical protein.
       0.568
EGW23285.1
KEGG: dat:HRM2_37590 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2.
 
     0.491
EGW20918.1
PFAM: Nucleoside recognition; KEGG: tbd:Tbd_1045 hypothetical protein.
     
 0.466
EGW22761.1
Hypothetical protein.
       0.461
EGW22759.1
TrkA-N domain protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: sdl:Sdel_2167 TrkA-N domain protein; overlaps another CDS with the same product name.
 
     0.443
EGW19956.1
Manually curated; KEGG: vap:Vapar_4498 transposase IS4 family protein.
  
     0.433
EGW22842.1
Hypothetical protein; KEGG: slp:Slip_1317 TM2 domain containing protein.
 
     0.415
EGW22767.1
UPF0235 protein yggU; PFAM: Protein of unknown function DUF167; manually curated; TIGRFAM: Conserved hypothetical protein CHP00251; KEGG: avn:Avin_03050 hypothetical protein; HAMAP: Protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.411
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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