STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW23120.1KEGG: bgf:BC1003_0018 TniB family protein; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core. (323 aa)    
Predicted Functional Partners:
EGW23119.1
PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bgf:BC1003_0017 integrase catalytic region.
 
     0.950
EGW23138.1
PFAM: TnsA endonuclease, N-terminal; KEGG: bgf:BC1003_0016 hypothetical protein.
 
     0.793
EGW23139.1
PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bgf:BC1003_0017 integrase catalytic region.
 
     0.787
EGW23121.1
KEGG: pst:PSPTO_0030 hypothetical protein.
       0.778
EGW22471.1
PFAM: Radical SAM; KEGG: mag:amb0046 Fe-S oxidoreductase.
  
     0.763
EGW22482.1
PFAM: Radical SAM; KEGG: geo:Geob_0662 radical SAM domain protein.
  
     0.719
EGW23117.1
Helix-turn-helix domain protein; KEGG: rsc:RCFBP_20815 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
    0.688
EGW22067.1
Hypothetical protein; KEGG: cvi:CV_0516 calcium binding hemolysin.
  
     0.624
EGW22075.1
Hemolysin-type calcium binding domain protein; PFAM: Haemolysin-type calcium binding related; Haemolysin-type calcium-binding region; KEGG: gpb:HDN1F_23650 hemolysin-type calcium-binding protein.
  
     0.620
EGW23281.1
MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: hypothetical protein.
  
     0.584
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.