STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW23141.1KEGG: bgf:BC1003_0019 hypothetical protein. (259 aa)    
Predicted Functional Partners:
EGW23140.1
TniB family protein; PFAM: Bacterial TniB; KEGG: bgf:BC1003_0018 TniB family protein.
  
 
 0.905
EGW23138.1
PFAM: TnsA endonuclease, N-terminal; KEGG: bgf:BC1003_0016 hypothetical protein.
       0.790
EGW23139.1
PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bgf:BC1003_0017 integrase catalytic region.
       0.786
EGW23143.1
Hypothetical protein.
      0.726
EGW23142.1
PFAM: Transposase, IS4-like; KEGG: cli:Clim_1571 transposase IS4 family protein.
       0.668
EGW23144.1
KEGG: bgf:BC1003_0019 hypothetical protein.
       0.467
EGW23137.1
KEGG: swp:swp_2718 hypothetical protein.
       0.427
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.