STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW23385.1PFAM: Transcriptional regulator, YbiH, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sat:SYN_00850 TetR family transcriptional regulator. (215 aa)    
Predicted Functional Partners:
EGW23386.1
KEGG: rpf:Rpic12D_4296 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.793
EGW23388.1
PFAM: Acriflavin resistance protein; KEGG: hse:Hsero_1521 cation/multidrug efflux pump transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.783
EGW23387.1
Hypothetical protein.
       0.752
EGW23390.1
PFAM: Acriflavin resistance protein; KEGG: cvi:CV_2734 drug efflux pump transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.618
EGW20560.1
KEGG: npu:Npun_R2082 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Phosphopantetheine-binding.
    
 0.572
EGW23392.1
KEGG: ppd:Ppro_2205 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
       0.566
EGW23389.1
Hypothetical protein.
       0.564
EGW23391.1
Hypothetical protein.
       0.564
EGW20005.1
TIGRFAM: Amino acid adenylation; KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding.
   
 
 0.510
EGW20554.1
TIGRFAM: Amino acid adenylation; KEGG: npu:Npun_R3425 beta-ketoacyl synthase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Thioesterase; overlaps another CDS with the same product name.
     
 0.481
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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