STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW19838.1PFAM: VacJ-like lipoprotein; KEGG: mca:MCA2076 VacJ lipoprotein. (297 aa)    
Predicted Functional Partners:
EGW23193.1
KEGG: nhl:Nhal_0414 hypothetical protein.
   
 
 0.875
EGW19637.1
PFAM: Toluene tolerance; KEGG: mca:MCA2792 hypothetical protein.
 
 
 
 0.853
EGW23679.1
PFAM: Toluene tolerance; KEGG: mca:MCA2792 hypothetical protein.
 
 
 
 0.850
EGW21422.1
PFAM: Mammalian cell entry related; KEGG: nwa:Nwat_0304 mammalian cell entry related domain-containing protein.
 
   
 0.803
EGW21920.1
KEGG: nmu:Nmul_A2559 toluene tolerance; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance.
 
 
 
 0.750
EGW19839.1
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
       0.620
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
       0.526
EGW21423.1
KEGG: mca:MCA1968 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140.
 
   
 0.470
bamB
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.466
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
     0.400
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.