STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW20119.1KEGG: tbd:Tbd_0074 AsnC family transcriptional regulator; overlaps another CDS with the same product name. (165 aa)    
Predicted Functional Partners:
EGW20120.1
SMART: Transcription regulator, AsnC-type; KEGG: tbd:Tbd_0073 AsnC family transcriptional regulator; overlaps another CDS with the same product name.
 
 0.999
EGW20118.1
KEGG: dar:Daro_3269 AsnC family transcriptional regulator.
  
 
0.996
EGW20122.1
KEGG: dar:Daro_3261 radical SAM family protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
 
 0.991
EGW20117.1
PFAM: Cytochrome d1, haem region; KEGG: cps:CPS_4223 NirF protein.
 
  
 0.971
EGW20115.1
KEGG: cti:RALTA_B2050 C-type cytochrome c55X precursor.
 
    0.966
EGW20113.1
PFAM: Cytochrome d1, haem region; Cytochrome c, class I; KEGG: rme:Rmet_3331 cytochrome d1, heme region.
 
  
 0.906
EGW20121.1
SMART: Transcription regulator, AsnC-type; KEGG: tbd:Tbd_0072 AsnC family transcriptional regulator.
 
   
0.890
EGW20347.1
TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: alv:Alvin_0264 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding.
    
 0.849
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
 
 
 0.847
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
 
 0.780
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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